| setGeneric {methods} | R Documentation |
Create a new generic function of the given name, for which formal methods can then be defined. Typically, an existing non-generic function becomes the default method, but there is much optional control. See the details section.
setGeneric(name, def= , group=list(), valueClass=character(), where= ,
package= , signature= , useAsDefault= , genericFunction= )
setGroupGeneric(name, def= , group=list(), valueClass=character(),
knownMembers=list(), package= , where= )
name |
The character string name of the generic function. In the simplest and most common case, a function of this name is already defined. The existing function may be non-generic or already a generic (see the details). |
def |
An optional function object, defining the generic. This
argument is usually only needed (and is then required) if there is
no current function of this name. In that case, the formal arguments
and default values for the generic are taken from def. You
can also supply this argument if you want the generic function to
do something other than just dispatch methods (an advanced topic
best left alone unless you are sure you want it).
Note that def is not the default method; use argument
useAsDefault if you want to specify the default separately.
|
group |
Optionally, a character string giving the group of generic functions to which this function belongs. Methods can be defined for the corresponding group generic, and these will then define methods for this specific generic function, if no method has been explicitly defined for the corresponding signature. See the references for more discussion. |
valueClass |
An optional character vector or unevaluated expression. The value returned by the generic function must have (or extend) this class, or one of the classes; otherwise, an error is generated. See the details section for supplying an expression. |
package |
The name of the package with which this function is associated. Usually determined automatically (as the package containing the non-generic version if there is one, or else the package where this generic is to be saved). |
where |
Where to store the resulting initial methods definition, and possibly the generic function; by default, stored into the top-level environment. |
signature |
Optionally, the signature of arguments in the function that can
be used in methods for this generic. By default, all arguments
other than ... can be used. The signature argument can
prohibit methods from using some arguments. The argument, if
provided, is a vector of formal argument names.
|
genericFunction |
The object to be used as a (nonstandard) generic function definition. Supply this explicitly only if you know what you are doing! |
useAsDefault |
Override the usual choice of default argument (an existing
non-generic function or no default if there is no such function).
Argument useAsDefault can be supplied,
either as a function to use for the default, or as a logical value.
FALSE says not to have a default method at all, so that an
error occurs if there is not an explicit or inherited method for a
call.
TRUE says to use the existing function as default,
unconditionally (hardly ever needed as an explicit argument).
See the section on details.
|
knownMembers |
(For setGroupGeneric only) The names of functions that are known to be
members of this group. This information is used to reset cached
definitions of the member generics when information about the group
generic is changed.
|
The setGeneric function is called to initialize a generic
function in an environment (usually the global environment), as
preparation for defining some methods for that function.
The simplest and most common situation is that name is already
an ordinary non-generic function, and you now want to turn this
function into a generic.
In this
case you will most often supply only name. The existing
function becomes the default method, and the special group and
valueClass properties remain unspecified.
A second situation is that you want to create a new, generic
function, unrelated to any existing function. In this case, you
need to supply a skeleton of the function definition, to define the
arguments for the function. The body of a generic function is
usually a standard form, standardGeneric(name) where
name is the quoted name of the generic function.
When calling setGeneric in this form, you would normally
supply the def argument as a function of this form. If not
told otherwise, setGeneric will try to find a non-generic
version of the function to use as a default. If you don't want this
to happen, supply the argument useAsDefault. That argument
can be the function you want to be the default method. You can supply
the argument as FALSE to force no default (i.e., to cause an error if
there is not direct or inherited method on call to the function).
The same no-default situation occurs if there is no non-generic form of the function, and
useAsDefault=FALSE. Remember, though, you can
also just assign the default you want (even one that generates an
error) rather than relying on the prior situation.
You cannot (and never need to) create an explicit generic for the primitive functions in the base library. These are dispatched from C code for efficiency and are not to be redefined in any case.
As mentioned, the body of a generic function usually does nothing
except for dispatching methods by a call to standardGeneric.
Under some circumstances you might just want to do some additional
computation in the generic function itself. As long as your
function eventually calls standardGeneric that is permissible
(though perhaps not a good idea, in that it makes the behavior of
your function different from the usual S model). If your explicit
definition of the generic function
does not call standardGeneric you are in trouble,
because none of the methods for the function will ever be
dispatched.
By default, the generic function can return any object.
If valueClass is supplied, it should be a vector of
class names; the value returned by a method is then required to
satisfy is(object, Class) for one of the specified classes.
An empty (i.e., zero length) vector of classes means anything is
allowed.
Note that more complicated requirements on the result can be
specified explicitly, by defining a non-standard generic function.
The setGroupGeneric function behaves like setGeneric except that
it constructs a group generic function, differing in two ways from an
ordinary generic function. First,
this function cannot be called directly, and the body of the function
created will contain a stop call with this information. Second, the
group generic function contains information about the known members of
the group, used to keep the members up to date when the group
definition changes, through changes in the search list or direct
specification of methods, etc.
The setGeneric function exists for its side effect: saving the
generic function to allow methods to be specified later. It returns
name.
A number of the basic R functions are specially implemented as
primitive functions, to be evaluated directly in the underlying C
code rather than by evaluating an S language definition. Primitive
functions are eligible to have methods, but are handled differently
by setGeneric and setGroupGeneric. A call to
setGeneric for a primitive function does not create a new
definition of the function, and the call is allowed only to
“turn on” methods for that function.
A call to setGeneric for a primitive causes the evaluator to
look for methods for that generic; a call to setGroupGeneric
for any of the groups that include primitives ("Arith", "Logic",
"Compare", "Ops", "Math", "Math2", "Summary", and "Complex")
does the same for each of the functions in that group.
You usually only need to use either function if the methods are
being defined only for the group generic. Defining a method for a
primitive function, say "+", by a call to setMethod
turns on method dispatch for that function. But in R defining a
method for the corresponding group generic, "Arith", does not
currently turn on method dispatch (for efficiency reasons). If
there are no non-group methods for the functions, you have two
choices.
You can turn on method dispatch for all the functions in the
group by calling setGroupGeneric("Arith"), or you can turn on
method dispatch for only some of the functions by calling
setGeneric("+"), etc. Note that in either case you should
give the name of the generic function as the only argument.
The R package methods implements, with a few exceptions, the programming interface for classes and methods in the book Programming with Data (John M. Chambers, Springer, 1998), in particular sections 1.6, 2.7, 2.8, and chapters 7 and 8.
While the programming interface for the methods package follows
the reference, the R software is an original implementation, so
details in the reference that reflect the S4 implementation may appear
differently in R. Also, there are extensions to the programming
interface developed more recently than the reference. For a
discussion of details see ?Methods
and the links from that documentation.
Methods for a discussion of other functions to specify
and manipulate the methods of generic functions.
### A non-standard generic function. It insists that the methods
### return a non-empty character vector (a stronger requirement than
### valueClass = "character" in the call to setGeneric)
setGeneric("authorNames",
function(text) {
value <- standardGeneric("authorNames")
if(!(is(value, "character") && any(nchar(value)>0)))
stop("authorNames methods must return non-empty strings")
value
})
## An example of group generic methods, using the class
## "track"; see the documentation of setClass for its definition
## define a method for the Arith group
setMethod("Arith", c("track", "numeric"),
function(e1, e2) {
e1@y <- callGeneric(e1@y , e2)
e1
})
setMethod("Arith", c("numeric", "track"),
function(e1, e2) {
e2@y <- callGeneric(e1, e2@y)
e2
})
## now arithmetic operators will dispatch methods:
t1 <- new("track", x=1:10, y=sort(rnorm(10)))
t1 - 100
1/t1